Items where Author is "von Haeseler, Arndt"

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Number of items: 89.

Journal Paper

  • Critical Growth of Cerebral Tissue in Organoids: Theory and Experiments
    Kiselev, Egor and Pflug, Florian G and von Haeseler, Arndt ISSN 550- 2368 American Physical Society (2023)

  • Identifying equally scoring trees in phylogenomics with incomplete data using Gentrius
    Chernomor, Olga and Elgert, Christiane and von Haeseler, Arndt ISSN 0362-4331 https://www.biorxiv.org/content/10.1101/108027v3 (2023)

  • SVhound: detection of regions that harbor yet undetected structural variation
    Paulin Paz, Luis and Raveendran, Muthuswamy and Harris, R. Alan and Rogers, Jeffrey and von Haeseler, Arndt and Sedlazeck, Fritz ISSN 1471-2105 Springer Nature (2023)

  • Molecular archaeology of human cognitive traits
    Kaczanowska, Joanna and Ganglberger, Florian and Chernomor, Olga and Kargl, Dominic and Galik, Bence and Hess, Andreas and Moodley, Yoshan and von Haeseler, Arndt and Bühler, Katja and Haubensak, Wulf ISSN 2211-1247 Cell Press (2022)

  • Gruffi: an algorithm for computational removal of stressed cells from brain organoid transcriptomic datasets
    Vértesy, Ábel and Eichmueller, Oliver L and Naas, Julia and Novatchkova, Maria and Esk, Christopher and Balmana, Meritxell and Ladstaetter, Sabrina and Bock, Christoph and von Haeseler, Arndt and Knoblich, Jürgen A. ISSN 0261-4189 Wiley-Blackwell- published through EMBO Press with support from Wiley (2022)

  • NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation
    Huth, Michelle and Santini, Laura and Galimberti, Elena and Ramesmayer, Julia and Titz-Teixeira, Fabian and Sehlke, Robert and Oberhuemer, Petra and Stummer, Sarah and Herzog, Veronika A. and Garmhausen, Michelle and Romeike, Merrit and Chugunova, Anastasia and Leesch, Katrin Friederike and Holcik, Laurenz and Weipoltshammer, Klara and Lackner, Andreas and Schoefer, Christian and von Haeseler, Arndt and Buecker, Christa and Pauli, Andrea and Ameres, Stefan L. and Smith, Austin and Beyer, Andreas and Leeb, Martin pp. 348-367 ISSN 1549-5477 https://genesdev.cshlp.org/content/36/5-6/348 (2022)

  • ModelRevelator: Fast phylogenetic model estimation via deep learning
    Burgstaller-Muehlbacher, Sebastian and Crotty, Stephen and Schmidt, Heiko A. and Drucks, Tamara and von Haeseler, Arndt ISSN 2692-8205 Cold Spring Harbor Laboratory (2021)

  • Culture-Free Detection of Antibiotic Resistance Markers from Native Patient Samples by Hybridization Capture Sequencing
    Ferreira, Ines and Lepuschitz, Sarah and Beisken, Stephan and Fiume, Giuseppe and Mrazek, Katharina and Frank, Bernhard J. H. and Huber, Silke and Knoll, Miriam A. and von Haeseler, Arndt and Materna, Arne and Hofstaetter, Jochen G. and Posch, Andreas E. and Weinberger, Johannes ISSN 20762607 MDPI (Multidisciplinary Digital Publishing Institute) (2021)

  • Predictive Antibiotic Susceptibility Testing by Next-Generation Sequencing for Periprosthetic Joint Infections: Potential and Limitations
    Lüftinger, Lukas and Ferreira, Ines and Frank, Bernhard J. H. and Beisken, Stephan and Weinberger, Johannes and von Haeseler, Arndt and Rattei, Thomas and Hofstaetter, Jochen G. and Posch, Andreas E. and Materna, Arne ISSN ISSN 2227-9059 MDPI (Multidisciplinary Digital Publishing Institute) (2021)

  • A compendium of genome-wide sequence reads from NBS (nucleotide binding site) domains of resistance genes in the common potato
    Prakash, Celine and Trognitz, Friederike Ch. and Venhuizen, Peter and von Haeseler, Arndt and Trognitz, Bodo ISSN 2045-2322 Springer Nature (2021)

  • NMD is required for timely cell fate transitions by fine-tuning gene expression and controlling translation
    Galimberti, Elena and Sehlke, Robert and Huth, Michelle and Garmhausen, Michelle and Romeike, Merrit and Ramesmayer, Julia and Stummer, Sarah and Titz-Teixeira, Fabian and Herzog, Veronika A. and Chugunova, Anastasia and Leesch, Katrin Friederike and Holcik, Laurenz and Bücker, Christa and Pauli, Andrea and Schoefer, Christian and Ameres, Stefan L. and Smith, Austin and Beyer, Andreas and Leeb, Martin and Weipoltshammer5, Klara and von Haeseler, Arndt and Santini, Laura and Lackner, Andreas ISSN none bioRxiv (2021)

  • A-to-I RNA Editing Uncovers Hidden Signals of Adaptive Genome Evolution in Animals
    Popitsch, Niko and Huber, Christian D. and Buchumenski, Ilana and Eisenberg, Eli and Jantsch, Michael F. and von Haeseler, Arndt and Gallach, Miguel pp. 345-357 ISSN 1759-6653 Oxford University Press (2021)

  • Timing strains of the marine insect Clunio marinus diverged and persist with gene flow
    Kaiser, Tobias and von Haeseler, Arndt and Tessmar-Raible, Kristin and Heckel, David G. pp. 1264-1280 ISSN 0962-1083 John Wiley & Sons Ltd (2021)

  • ATM controls meiotic DNA double-strand break formation and recombination and affects synaptonemal complex organization in plants
    Kurzbauer, Marie-Therese and Janisiw, Michael Peter and Paulin Paz, Luis and Mota, Ignacio Prusén and Tomanov, Konstantin and Krsicka, Ondrej and von Haeseler, Arndt and Schubert, Veit and Schlögelhofer, Peter pp. 1633-1656 ISSN 1040-4651 Oxford Academic Journals (2021)

  • Sequencing of the Arabidopsis NOR2 reveals its distinct organization and tissue-specific rRNA ribosomal variants
    Sims, Jason and Sestini, Giovanni and Elgert, Christiane and von Haeseler, Arndt and Schlögelhofer, Peter ISSN 2041-1723 Springer Nature Limited (2021)

  • TMT-Opsins differentially modulate medaka brain function in a context-dependent manner
    Fontinha, Bruno M. and Zekoll, Theresa and Al-Rawi, Mariam and Gallach, Miguel and Reithofer, Florian and Barker, Alison J. and Hofbauer, Maximilian and Fischer, Ruth M. and von Haeseler, Arndt and Baier, Herwig and Tessmar-Raible, Kristin ISSN 1544-9173 Public Library of Science (2021)

  • A human tissue screen identifies a regulator of ER secretion as a brain-size determinant
    Esk, Christopher and Lindenhofer, Dominic and Haendeler, Simon and Wester, Roelof A. and Pflug, Florian G and Schroeder, Benoit and Bagley, Joshua A. and Elling, Ulrich and Zuber, Johannes and von Haeseler, Arndt and Knoblich, Jürgen A. pp. 935-941 ISSN 0036-8075 American Association for the Advancement of Science (2020)

  • Structure of the space of taboo-free sequences
    Manuel, Cassius and von Haeseler, Arndt ISSN none bioRxiv Cold Spring Harbor Laboratory (2020)

  • Poly(ADP-ribose) glycohydrolase coordinates meiotic DNA double-strand break induction and repair independent of its catalytic activity
    Janisiw, Eva and Raices, Marilina and Balmir, Fabiola and Paulin Paz, Luis and Baudrimont, Antoine and von Haeseler, Arndt and Yanowitz, Judith L. and Jantsch, Verena and Silva, Nicola ISSN 2041-1723 Springer Nature (2020)

  • Structure of the space of taboo-free sequences
    Manuel, Cassius and von Haeseler, Arndt pp. 1029-1057 ISSN 0303-6812 Springer Nature (2020)

  • Complex Evolution of Light-Dependent Protochlorophyllide Oxidoreductases in Aerobic Anoxygenic Phototrophs: Origin, Phylogeny, and Function
    Chernomor, Olga and Peters, Lena and Schneidewind, Judith and Loeschcke, Anita and Knieps-Gruenhagen, Esther and Schmitz, Fabian and von Lieres, Eric and Kutta, Roger Jan and Svenssons, Vera and Jaeger, Karl-Erich and Drepper, Thomas and von Haeseler, Arndt and Krauss, Ulrich ISSN 0737-4038 Oxford University Press on behalf of the Society for Molecular Biology and Evolution (2020)

  • Complex Evolution of Light-Dependent Protochlorophyllide Oxidoreductases in Aerobic Anoxygenic Phototrophs: Origin, Phylogeny, and Function
    Chernomor, Olga and Peters, Lena and Schneidewind, Judith and Loeschcke, Anita and Knieps-Gruenhagen, Esther and Schmitz, Fabian and von Lieres, Eric and Kutta, Roger Jan and Svenssons, Vera and Jaeger, Karl-Erich and Drepper, Thomas and von Haeseler, Arndt pp. 819-837 ISSN 0737-4038 Oxford University Press (2020)

  • Large-scale assessment of antimicrobial resistance marker databases for genetic phenotype prediction: a systematic review
    Mahfouz, Norhan and Ferreira, Ines and Beisken, Stephan and von Haeseler, Arndt and Posch, Andreas E. ISSN 0305-7453 Oxford University Press (2020)

  • Distinguishing Felsenstein Zone from Farris Zone Using Neural Networks
    Leuchtenberger, Alina F. and Crotty, Stephen and Drucks, Tamara and Schmidt, H. A. and Burgstaller-Muehlbacher, Sebastian and von Haeseler, Arndt pp. 3632-3641 ISSN 0737-4038 Oxford University Press on behalf of the Society for Molecular Biology and Evolution (2020)

  • Species Identification and Antibiotic Resistance Prediction by Analysis of Whole-Genome Sequence Data by Use of ARESdb: an Analysis of Isolates from the Unyvero Lower Respiratory Tract Infection Trial
    Ferreira, Ines and Beisken, Stephan and Lueftinger, Lukas and Weinmaier, Thomas and Klein, Matthias and Bacher, Johannes and Patel, Robin and von Haeseler, Arndt and Posch, Andreas E. ISSN 0095-1137 American Society for Microbiology Journals (2020)

  • IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era
    Minh, Bui Quang and Schmidt, Heiko A. and Chernomor, Olga and Schrempf, Dominik and Woodhams, Michael and von Haeseler, Arndt and Lanfear, Robert ISSN none Cold Spring Harbor Laboratory (2019)

  • Distinguishing Felsenstein zone from Farris zone using neural networks
    Drucks, Tamara and Leuchtenberger, Alina F. and Burgstaller-Muehlbacher, Sebastian and Crotty, Stephen and Schmidt, Heiko A. and von Haeseler, Arndt ISSN none Cold Spring Harbor Laboratory (2019)

  • GHOST: Recovering Historical Signal from Heterotachously Evolved Sequence Alignments
    Crotty, Stephen M and Minh, Bui Quang and Bean, Nigel G and Holland, Barbara R and Tuke, Jonathan and Jermiin, Lars S and von Haeseler, Arndt and Smith, Stephen Systematic Biology. ISSN 1063-5157 Oxford University Press on behalf of the Society of Systematic Biologists (2019)

  • Insertion Pool Sequencing for Insertional Mutant Analysis in Complex Host‐Microbe Interactions
    Uhse, Simon and Pflug, Florian G and von Haeseler, Arndt and Djamei, Armin ISSN 2379-8068 John Wiley and Sons Inc. (2019)

  • Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets
    Neumann, Tobias and Herzog, Veronika A. and Muhar, Matthias and von Haeseler, Arndt and Zuber, Johannes and Ameres, Stefan L. and Rescheneder, Philipp ISSN 1471-2105 Springer Nature (2019)

  • Polymorphism-Aware Species Trees with Advanced Mutation Models, Bootstrap, and Rate Heterogeneity
    Schrempf, Dominik and Minh, Bui Quang and von Haeseler, Arndt and Kosiol, Carolin pp. 1294-1301 ISSN 0737-4038 Oxford University Press (2019)

  • Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase
    Schenk, Sven and Bannister, Stefanie C. and Sedlazeck, Fritz and Anrather, Dorothea and Minh, Bui Quang and Bileck, Andrea and Hartl, Markus and von Haeseler, Arndt and Gerner, Christopher and Raible, Florian and Tessmar-Raible, Kristin ISSN 2050-084X eLife Sciences Publications Ltd. (2019)

  • VARIFI—Web-Based Automatic Variant Identification, Filtering and Annotation of Amplicon Sequencing Data
    Krunic, Milica and Venhuizen, Peter and Müllauer, Leonhard and Kaserer, Bettina and von Haeseler, Arndt ISSN 1744-828X MDPI AG (2019)

  • The Evolutionary Traceability of a Protein
    Jain, Arpit and Perisa, Dominik and Fliedner, Fabian and von Haeseler, Arndt and Ebersberger, Ingo pp. 531-545 ISSN 1759-6653 Oxford University Press (2019)

  • SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis
    Muhar, Matthias and Ebert, Anna and Neumann, Tobias and Umkehrer, Christian and Jude, Julian Georg and Wieshofer, Corinna and Rescheneder, Philipp and Lipp, Jesse J. and Herzog, Veronika A. and Reichholf, Brian and Cisneros, David A. and Hoffmann, Thomas and Schlapansky, Moritz F. and Bhat, Pooja and von Haeseler, Arndt and Köcher, Thomas and Obenauf, Anna C. and Popow, Johann and Ameres, Stefan L. and Zuber, Johannes pp. 800-805 ISSN 0036-8075 American Association for the Advancement of Science (2018)

  • Germline Variants in the POT1-Gene in High-Risk Melanoma Patients in Austria
    Müller, Christoph and Krunic, Milica and Wendt, Judith and von Haeseler, Arndt and Okamoto, Ichiro G3: Genes|Genomes|Genetics, 8 (5). pp. 1475-1480 ISSN 2160-1836 The Genetics Society of America (GSA) (2018)

  • Complex Models of Sequence Evolution Require Accurate Estimators as Exemplified with the Invariable Site Plus Gamma Model
    Nguyen, Lam-Tung and von Haeseler, Arndt and Minh, Bui Quang Systematic Biology, 67 (3). pp. 552-558 ISSN 1063-5157 Oxford University Press (2018)

  • Accurate detection of complex structural variations using single-molecule sequencing
    Sedlazeck, Fritz J. and Rescheneder, Philipp and Smolka, Moritz and Fang, Han and Nattestad, Maria and von Haeseler, Arndt and Schatz, Michael C. Nature Methods, 15 (6). pp. 461-468 ISSN 1548-7091 Nature Publishing Group (2018)

  • In vivo insertion pool sequencing identifies virulence factors in a complex fungal–host interaction
    Uhse, Simon and Pflug, Florian G. and Stirnberg, Alexandra and Ehrlinger, Klaus and von Haeseler, Arndt and Djamei, Armin PLOS Biology, 16 (4). e2005129 ISSN 1544-9173 PLoS (2018)

  • Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes
    Alves, Ricardo J. Eloy and Minh, Bui Quang and Urich, Tim and von Haeseler, Arndt and Schleper, Christa Nature Communications, 9 (1). ISSN 2041-1723 Springer Nature Publishing AG (2018)

  • TRUmiCount: correctly counting absolute numbers of molecules using unique molecular identifiers
    Pflug, Florian G and von Haeseler, Arndt Bioinformatics, 34 (18). pp. 3137-3144 ISSN 1367-4803 Oxford University Press (2018)

  • MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation
    Hoang, Diep Thi and Vinh, Le Sy and Flouri, Tomáš and Stamatakis, Alexandros and von Haeseler, Arndt and Minh, Bui Quang BMC Evolutionary Biology, 18 (11). ISSN 1471-2148 Spinger Nature (2018)

  • UFBoot2: Improving the Ultrafast Bootstrap Approximation
    Hoang, Diep Thi and Chernomor, Olga and von Haeseler, Arndt and Minh, Bui Quang and Vinh, Le Sy Molecular Biology and Evolution, 35 (2). pp. 518-522 ISSN 0737-4038 Oxford University Press (2018)

  • Complex Models of Sequence Evolution Require Accurate Estimators as Exemplified with the Invariable Site Plus Gamma Model
    von Haeseler, Arndt and Minh, Bui Quang and Lam-Tung, Nguyen ISSN 1063-5157 Oxford University Press (2017)

  • HIV-1 Full-Genome Phylogenetics of Generalized Epidemics in Sub-Saharan Africa: Impact of Missing Nucleotide Characters in Next-Generation Sequences
    Ratmann, Oliver and Wymant, Chris and Colijn, Caroline and Danaviah, Siva and Essex, Max and Frost, Simon and Gall, Astrid and Gaiseitsiwe, Simani and Grabowski, Mary K. and Gray, Ronald and Guindon, Stephane and von Haeseler, Arndt and Kaleebu, Pontiano and Kendall, Michelle and Kozlov, Alexey and Manasa, Justen and Minh, Bui Quang and Moyo, Sikhulile and Novitsky, Vlad and Nsubuga, Rebecca and Pillay, Sureshnee and Quinn, Thomas C. and Seemwanga, Deogratius and Stamatakis, Alexandros and Trifinopoulos, Jana and Wawer, Maria and Brown, Andy Leigh and de Oliveira, Tulio and Kellam, Paul and Pillay, Deenan and Fraser, Christophe and Serwadda, David pp. 1083-1098 ISSN 0889-2229 Mary Ann Liebert, Inc. publishers (2017)

  • UFBoot2: Improving the Ultrafast Bootstrap Approximation
    Hoang, Diep Thi and Chernomor, Olga and von Haeseler, Arndt and Minh, Bui Quang and Vinh, Le Sy ISSN 0737-4038 Oxford University Press (2017)

  • Thiol-linked alkylation of RNA to assess expression dynamics
    Herzog, Veronika A. and Reichholf, Brian and Neumann, Tobias and Rescheneder, Philipp and Bhat, Pooja and Burkard, Thomas R. and Wlotzka, Wiebke and von Haeseler, Arndt and Zuber, Johannes and Ameres, Stefan L. ISSN 1548-7091 Macmillan Publishers Limited, part of Springer Nature (2017)

  • ModelFinder: fast model selection for accurate phylogenetic estimates
    Kalyaanamoorthy, Subha and Bui, Minh Q. and Wong, Thomas K F and von Haeseler, Arndt and Jermiin, Lars S. pp. 587-589 ISSN 1548-7091 Macmillan Publishers Limited, part of Springer Nature (2017)

  • An Enumerative Combinatorics Model for Fragmentation Patterns in RNA Sequencing Provides Insights into Nonuniformity of the Expected Fragment Starting-Point and Coverage Profile
    Prakash, Celine and von Haeseler, Arndt pp. 200-2012 ISSN 1066-5277 Mary Ann Liebert, Inc. (2017)

  • The genomic basis of circadian and circalunar timing adaptations in a midge
    Kaiser, Tobias and Poehn, Birgit and Szkiba, David and Preussner, Marco and Sedlazeck, Fritz and Zrim, Alexander and Neumann, Tobias and Nguyen, Lam Tung and Betancourt, Andrea J. and Hummel, Thomas and Vogel, Heiko and Dorner, Silke and Heyd, Florian and von Haeseler, Arndt and Tessmar-Raible, Kristin pp. 69-73 ISSN 0028-0836 Macmillan Publishers Limited, part of Springer Nature (2016)

  • Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices
    Chernomor, Olga and von Haeseler, Arndt and Minh, Bui Quang Systematic Biology, 65 (6). pp. 997-1008 ISSN 1063-5157 Oxford University Press, on behalf of the Society of Systematic Biologists (2016)

  • Reversible polymorphism-aware phylogenetic models and their application to tree inference
    Schrempf, Dominik and Minh, Bui Quang and De Maio, Nicola and von Haeseler, Arndt and Kosiol, Carolin Journal of Theoretical Biology, 407. pp. 362-370 ISSN 0022-5193 Elsevier (2016)

  • An Enumerative Combinatorics Model for Fragmentation Patterns in RNA Sequencing Provides Insights into Nonuniformity of the Expected Fragment Starting-Point and Coverage Profile
    Prakash, Celine and von Haeseler, Arndt Journal of Computational Biology, 23. ISSN 1066-5277 Mary Ann Liebert Inc. (2016)

  • Next-generation sequencing diagnostics of bacteremia in septic patients
    Grumaz, Silke and Stevens, Philip and Grumaz, Christian and Decker, Sebastian O. and Weigand, Markus A. and Hofer, Stefan and Brenner, Thorsten and von Haeseler, Arndt and Sohn, Kai Genome Medicine, 8:73 (1). ISSN 1756-994X BioMed Central (Springer Nature) (2016)

  • A-type lamins bind both hetero- and euchromatin, the latter being regulated by lamina-associated polypeptide 2 alpha
    von Haeseler, Arndt and Rescheneder, Philipp and Gesson, Kevin and Skoruppa, Michael P. and Dechat, Thomas and Foisner, Roland pp. 462-473 ISSN 1088-9051 CSH Press (Cold Spring Harbor Press) (2016)

  • W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
    Trifinopoulos, Jana and Nguyen, Lam-Tung and von Haeseler, Arndt and Minh, Bui Quang Nucleic Acids Research, 44 (W1). W232-W235 ISSN 0305-1048 Oxford University Press (2016)

  • Separable Roles for a Caenorhabditis elegans RMI1 Homolog in Promoting and Antagonizing Meiotic Crossovers Ensure Faithful Chromosome Inheritance
    von Haeseler, Arndt and Gallach, Miguel and Paulin Paz, Luis and Jantsch, Verena and Villeneuve, Anne M. and Tam, Angela and Habacher, Cornelia and Tang, Louis and Dello Stritto, Maria Rosaria and Mikl, Martin and Millonigg, Sophie and Woglar, Alexander and Hamminger, Patricia and Jagut, Marlène ISSN 1544-9173 PLOS Biology (2016)

  • Consequences of Common Topological Rearrangements for Partition Trees in Phylogenomic Inference
    von Haeseler, Arndt and Chernomor, Olga and Bui, Minh Q. pp. 1129-1142 ISSN 1935-472X Mary Ann Liebert Inc. (2015)

  • The Candida albicans Histone Acetyltransferase Hat1 Regulates Stress Resistance and Virulence via Distinct Chromatin Assembly Pathways.
    von Haeseler, Arndt and Sedlazeck, Fritz e1005218 ISSN 1553-7366 PUBLIC LIBRARY OF SCIENCE (2015)

  • Teaser: Individualized benchmarking and optimization of read mapping results for NGS data.
    Smolka, Moritz and von Haeseler, Arndt and Sedlazeck, Fritz and Rescheneder, Philipp ISSN 1474-760X BioMed Central Ltd (2015)

  • Decreased expression of endogenous feline leukemia virus in cat lymphomas: a case control study
    von Haeseler, Arndt and Krunic, Milica and Sedlazeck, Fritz ISSN 1746-6148 BioMed Central Ltd (2015)

  • Innate Immune Response to Streptococcus pyogenes Depends on the Combined Activation of TLR13 and TLR2
    von Haeseler, Arndt and Köstler, Tina and Kovarik, Pavel ISSN 1932-6203 PUBLIC LIBRARY OF SCIENCE (2015)

  • Split diversity in constrained conservation prioritization using integer linear programming
    von Haeseler, Arndt and Bui, Minh Q. and Chernomor, Olga and Henzinger, Monika pp. 83-91 ISSN 2041-210X WILEY-BLACKWELL (2015)

  • The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima
    von Haeseler, Arndt and Kaiser, Tobias e1002005 ISSN e1002005 PUBLIC LIBRARY SCIENCE (2014)

  • IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
    von Haeseler, Arndt and Schmidt, Heiko A. and Bui, Minh Q. and Nguyen, Lam Tung pp. 268-274 ISSN 0737-4038 Oxford Journals (2014)

  • ADAR2 induces reproducible changes in sequence and abundance of mature microRNAs in the mouse brain
    von Haeseler, Arndt and Sedlazeck, Fritz and Tauber, Stefanie ISSN 0305-1048 Oxford University Press on behalf of Nucleic Acids Research (2014)

  • The Phylogenetic Likelihood Library
    von Haeseler, Arndt and Bui, Minh Q. and Nguyen, Lam Tung pp. 356-362 ISSN 1076-836X Oxford University Press on behalf of the Society for Molecular Biology and Evolution. (2014)

  • Discovery of the first light-dependent protochlorophyllide oxidoreductase in anoxygenic phototrophic bacteria
    von Haeseler, Arndt and Bui, Minh Q. pp. 1066-1078 ISSN 0950-382X (2014)

  • A SAGE based approach to human glomerular endothelium: defining the transcriptome, finding a novel molecule and highlighting endothelial diversit
    von Haeseler, Arndt and Kupczok, Anne ISSN 1471-2164 BMC Genomics (2014)

  • SNP2GO: Functional Analysis of Genome-Wide Association Studies
    von Haeseler, Arndt and Gallach, Miguel and Szkiba, David pp. 285-289 ISSN 1943-2631 Genetics (2014)

  • Exploring phylogenomic data
    von Haeseler, Arndt and Ebersberger, Ingo 595-618 ISSN 9783110277524 DE GRUYTER (2014)

  • The evolution of the ribosome biogenesis pathway from a yeast perspective
    Ebersberger, Ingo and von Haeseler, Arndt and Schmitzberger, P. pp. 1509-1523 ISSN 1362-4962 Oxford Journals (2013)

  • State-of the art methodologies dictate new standards for phylogenetic analysis
    von Haeseler, Arndt and Anisimova , Maria ISSN 1471-2148 (2013)

  • Benefit-of-doubt (BOD) scoring: a sequencing-based method for SNP candidate assessment from high to medium read number data sets
    Sedlazeck, Fritz J. and von Haeseler, Arndt Genomics, 101 (--). pp. 204-209 ISSN 1471-2164 (2013)

  • NGC: Lossless and Lossy Compression of Aligned High-throughput Sequencing Data
    Popitsch, Niko and von Haeseler, Arndt Nucleic Acids Res., 41 (1). e27 ISSN 0305-1048 (2013)

  • Ultra-Fast Approximation for Phylogenetic Bootstrap
    Bui, Minh Q. and von Haeseler, Arndt Mol. Biol. Evol., 30 (5). pp. 1188-1195 ISSN 0737-4038 (2013)

  • Advanced Methylome Analysis after Bisulfite Deep Sequencing: an Example in Arabidopsis.
    Dinh, Huy Q. and Sedlazeck, Fritz J. and von Haeseler, Arndt PLoS ONE, 7 (--). ISSN 1932-6203 (2012)

  • Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs
    Tauber, Stefanie and Sedlazeck, Fritz and von Haeseler, Arndt Genome Res., 22. pp. 1468-1476 ISSN 1088-9051 (2012)

  • Identification of an ancient haemophilia A splice site mutation
    von Haeseler, Arndt Thromb. Res. (130). pp. 445-450 ISSN 0049-3848 (2012)

  • ImOSM: Intermittent Evolution and Robustness of Phylogenetic Methods
    Nguyen, Minh Anh Thi and Gesell, Tanja and von Haeseler, Arndt Mol. Biol. Evol., 29 (2). pp. 663-673 ISSN 0737-4038 (2012)

  • On the group theoretical background of assigning stepwise mutations onto phylogenies
    Fischer, Mareike and Nguyen, Minh Anh Thi and von Haeseler, Arndt Algorithms for Molecular Biologie, 7 (36). ISSN 1748-7188 (2012)

  • ImOSM: Intermittent Evolution and Robustness of Phylogenetic Methods.
    Thi Nguyen, Minh Anh and Gesell, Tanja and von Haeseler, Arndt Molecular biology and evolution, - (-). ISSN 1537-1719 (In Press) (2011)

  • MISFITS: evaluating the goodness of fit between a phylogenetic model and an alignment.
    Nguyen, Minh Anh Thi and Klaere, Steffen and von Haeseler, Arndt Molecular biology and evolution, 28 (1). pp. 143-52 ISSN 1537-1719 (2011)

  • Random Tree-Puzzle leads to the Yule-Harding distribution.
    Vinh, Le Sy and Fuehrer, Andrea and von Haeseler, Arndt Molecular biology and evolution, 28 (2). pp. 873-7 ISSN 1537-1719 (2011)

  • Accuracy of phylogeny reconstruction methods combining overlapping gene data sets.
    Kupczok, Anne and Schmidt, Heiko A and von Haeseler, Arndt Algorithms for molecular biology : AMB, 5 (1). p. 37 ISSN 1748-7188 (2010)

  • A phylogenomic approach to resolve the arthropod tree of life.
    Meusemann, Karen and von Reumont, Björn M and Simon, Sabrina and Roeding, Falko and Strauss, Sascha and Kück, Patrick and Ebersberger, Ingo and Walzl, Manfred and Pass, Günther and Breuers, Sebastian and Achter, Viktor and von Haeseler, Arndt and Burmester, Thorsten and Hadrys, Heike and Wägele, J Wolfgang and Misof, Bernhard Molecular biology and evolution, 27 (11). pp. 2451-64 ISSN 1537-1719 (2010)

    • Book

  • MASon: Million Alignments In Seconds - A Platform Independent Pairwise Sequence Alignment Library for Next Generation Sequencing Data.
    Rescheneder, Philipp and Sedlazeck, Fritz and von Haeseler, Arndt Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2012) SciTePress, Setubal, Portugal (2012)

    • Book Section/Chapter

  • Split Diversity: Measuring and Optimizing Biodiversity Using Phylogenetic Split Networks
    Chernomor, Olga and Klaere, Steffen and von Haeseler, Arndt and Bui, Minh Q. In: Biodiversity Conservation and Phylogenetic Systematics. Topics in Biodiversity and Conservation, 14 Springer International Publishing, Heidelberg/New York, pp. 173-195 ISBN 1875-1288 (2016)

  • SDA*: A Simple and Unifying Solution to Recent Bioinformatic Challenges for Conservation Genetics
    Minh, Bui Quang and Klaere, Steffen and von Haeseler, Arndt In: 2010 Second International Conference on Knowledge and Systems Engineering. VDE VERLAG Conference Proceedings, Hanoi, pp. 33-37 (2010)

    • This list was generated on Thu Nov 21 13:25:23 2024 CET.
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