Items where Research Area is "Bioinformatics and Computational Biology" and Year is 2024

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Number of items: 9.

  • 3D Feasibility of 2D RNA-RNA Interaction Paths by stepwise Folding Simulations
    Beckmann, Irene K. and Waldl, Maria and Will, Sebastian and Hofacker, Ivo L. RNA. pp. 113-123 ISSN 1355-8382 (2024)

  • Pan-flavivirus analysis reveals sfRNA-independent, 3’UTR-biased siRNA production from an Insect-Specific Flavivirus
    Besson, Benoit and Overheul, Gijs and Wolfinger, Michael T. and van Rij, Ronald ISSN 0022-538X (2024)

  • A Structural Refinement Technique for Protein-RNA Complexes Using a Combination of AI-based Modeling and Flexible Docking: A Study of Musashi-1 Protein
    Darai, Nitchakan and Hengphasatporn, Kowit and Wolschann, Peter and Wolfinger, Michael T. and Shigeta, Yasuteru and Rungrotmongkol, Thanyada and Harada, Ryuhei ISSN 0009-2673 (2024)

  • The 3’ terminal region of Zika virus RNA contains a conserved G-quadruplex and is unfolded by human DDX17
    Gemmill, Darren and Nelson, Corey and Badmalia, Maulik D. and Pereira, Higor and Kerr, Liam and Wolfinger, Michael T. and Patel, Trushar R. ISSN 0829-8211 (2024)

  • A framework for automated scalable designation of viral pathogen lineages from genomic data
    McBroome, Jakob and de Bernardi Schneider, Adriano and Roemer, Corneslius and Wolfinger, Michael T. and Hinrichs, Angie and O'Toole, Aine and Ruis, Christopher and Turakhia, Yatish and Rambaut, Andrew and Corbett-Detig, Russell ISSN 2058-5276 (2024)

  • tRNA expression and modification landscapes, and their dynamics during zebrafish embryo development
    Rappol, Tom and Waldl, Maria and Chugunova, Anastasia and Hofacker, Ivo L. and Pauli, Andrea and Vilardo, Elisa Nucleic Acids Research, 52 (17). pp. 10575-10594 ISSN 0305-1048 Oxford University Press (2024)

  • Sampling globally and locally correct RNA 3D structures using Ernwin, SPQR and experimental SAXS data
    Thiel, Bernhard C and Bussi, Giovanni and Poblete, Simón and Hofacker, Ivo L. Nucleic Acids Research, 52 (16). e73-e73 ISSN 0305-1048 Oxford University Press (2024)

  • Sequence Design for RNA-RNA Interactions
    Waldl, Maria and Yao, Hua-Ting and Hofacker, Ivo L. In: RNA Design: Methods and Protocols. Methods in Molecular Biology (2847) Springer US, New York, NY, pp. 1-16 ISBN 978-1-0716-4079-1 (2024)

  • Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction
    von Löhneysen, Sarah and Spicher, Thomas and Varenyk, Yuliia and Yao, Hua-Ting and Lorenz, Ronny and Hofacker, Ivo L. and Stadler, Peter F. Journal of Computational Biology, 31 (6). pp. 549-563 ISSN 1066-5277 Mary Ann Liebert (2024)

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