Items where Author is "Stamatakis, Alexandros"

Parallel Inference of Phylogenetic Stands with Gentrius

Togkousidis, Anastasis and Chernomor, Olga and Stamatakis, Alexandros In: 2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) , 15-19 May 2023 , St. Petersburg, FL, USA (2023)

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

Mavian, Carla and Kosakovsky Pond, Sergei and Marini, Simone and Rife Magalis, Brittany and Vandamme, Anne-Miek and Delicour, Simon and Scarpino, Samuel V. and Houldcroft, Charlotte and Vallbona-Arenas, Julian and Paisie, Taylor K. and Trovão, Nídia S. and Boucher, Christina and Zhang, Yun and Scheuermann, Richard H. and Gascuel, Olivier and Lam, Tommy Tsan-Yuk and Suchard, Marc A. and Abecasis, Ana and Wilkinson, Eduan and de Oliveira, Tulio and Bento, Ana I. and Schmidt, Heiko A. and Martin, Darren and Hadfield, James and Faria, Nuno and Grubaugh, Nathan D. and Neher, Richard A. and Baele, Guy and Lemey, Philippe and Stadler, Tanja and Albert, Jan and Crandall, Keith A. and Leitner, Thomas and Stamatakis, Alexandros and Prosperi, Mattia and Salemi, Marco pp. 12522-12523 ISSN 0027-8424 National Academy of Sciences (2021)

Want to track pandemic variants faster? Fix the bioinformatics bottleneck

Hodcroft, Emma B. and De Maio, Nicola and Lanfear, Robert and MacCannell, Duncan R. and Minh, Bui Quang and Schmidt, Heiko A. and Stamatakis, Alexandros and Goldman, Nick and Dessimoz, Christophe pp. 30-33 ISSN 0028-0836 Springer Nature (2021)

Empirical Analysis of Phylogenetic Quasi-Terraces

Breitling, Paula and Stamatakis, Alexandros and Chernomor, Olga and Bettisworth, Ben and Reszczynski, Lukasz ISSN none Cold Spring Harbor Laborat (2019)

MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation

Hoang, Diep Thi and Vinh, Le Sy and Flouri, Tomáš and Stamatakis, Alexandros and von Haeseler, Arndt and Minh, Bui Quang BMC Evolutionary Biology, 18 (11). ISSN 1471-2148 Spinger Nature (2018)

HIV-1 Full-Genome Phylogenetics of Generalized Epidemics in Sub-Saharan Africa: Impact of Missing Nucleotide Characters in Next-Generation Sequences

Ratmann, Oliver and Wymant, Chris and Colijn, Caroline and Danaviah, Siva and Essex, Max and Frost, Simon and Gall, Astrid and Gaiseitsiwe, Simani and Grabowski, Mary K. and Gray, Ronald and Guindon, Stephane and von Haeseler, Arndt and Kaleebu, Pontiano and Kendall, Michelle and Kozlov, Alexey and Manasa, Justen and Minh, Bui Quang and Moyo, Sikhulile and Novitsky, Vlad and Nsubuga, Rebecca and Pillay, Sureshnee and Quinn, Thomas C. and Seemwanga, Deogratius and Stamatakis, Alexandros and Trifinopoulos, Jana and Wawer, Maria and Brown, Andy Leigh and de Oliveira, Tulio and Kellam, Paul and Pillay, Deenan and Fraser, Christophe and Serwadda, David pp. 1083-1098 ISSN 0889-2229 Mary Ann Liebert, Inc. publishers (2017)