Items where Author is "Kerpedjiev, Peter"

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Number of items: 4.

  • 3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements.
    Thiel, Bernhard and Beckmann, Irene K. and Kerpedjiev, Peter and Hofacker, Ivo L. ISSN 2046-1402 (2019)

  • RIsearch2: suffix array-based large-scale prediction of RNA-RNA interactions and siRNA off-targets
    Alkan, Ferhat and Wenzel, Anne and Palasca, Oana and Kerpedjiev, Peter and Rudebeck, Anders Frost and Stadler, Peter F. and Hofacker, Ivo L. and Gorodkin, Jan e60 ISSN 0305-1048 (2017)

  • Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams
    Kerpedjiev, Peter and Hammer, Stefan and Hofacker, Ivo L. Bioinformatics, 31 (20). pp. 3377-3379 ISSN 1367-4803 Oxford University Press (2015)

  • Predicting RNA 3D structure using a coarse-grain helix-centered model
    Kerpedjiev, Peter and Höner zu Siederdissen, Christian and Hofacker, Ivo L. RNA, 21. pp. 1110-1121 ISSN 1355-8382 (2015)

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